NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207670_11017417

Scaffold Ga0207670_11017417


Overview

Basic Information
Taxon OID3300025936 Open in IMG/M
Scaffold IDGa0207670_11017417 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)697
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021280Metagenome / Metatranscriptome219Y
F053954Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0207670_110174171F053954N/AAVMLFALGMTLVILSFANPGLILPETLKTSQALGGIAIAASGFIPIFFSRRDKVVALRSLLNSYQHQHVGGLSPDAKLDHYFDQYFDNVVRG
Ga0207670_110174172F021280AGGMKVSTSLTPGDQLPVLLERIERREKSARIRGVLYSLLPVTFIVILLGYAATSVRNAQKEIDALKTEATTYTSQIDALKNNAETYKTQAQSQQGNADNYKNQVTELQTQLAEAQKNLADAVTLSRSLRTLDFANAKEIA
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