NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207704_10014216

Scaffold Ga0207704_10014216


Overview

Basic Information
Taxon OID3300025938 Open in IMG/M
Scaffold IDGa0207704_10014216 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4013
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002319Metagenome / Metatranscriptome571Y
F044216Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0207704_100142161F044216N/AMVDQIMNRVLCFRPATALGLFLILVVATFAQNAPKKKILVVNGRTADEVVVQIDGHSYVDVETLARIMNATVSFEPGSVMLTVPAIEAGTKTERTAPEFSKDFARAGISQLAEMREWKSAIASAIRSGVAASNWLGPWLHDHRFRAEGSLSQTSLAAKTESDHRALQLLKNEFTNLGEWDNNTQATIHSLNAEQTINPGMAQNDPLLAKISECGNFLDAMLVGGEFADSPSCH
Ga0207704_100142167F002319GGAGMTSQAVKIQVIASVPIECEFWPEDDGWKGLSRSPSATVRGSSFEDAKKNIASELQAQIEAILREHPQKSPRRIA
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