Basic Information | |
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Taxon OID | 3300025939 Open in IMG/M |
Scaffold ID | Ga0207665_10000021 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 111867 |
Total Scaffold Genes | 97 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 75 (77.32%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.4774 | Long. (o) | -85.451 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000092 | Metagenome / Metatranscriptome | 2385 | Y |
F001311 | Metagenome / Metatranscriptome | 726 | Y |
F004042 | Metagenome / Metatranscriptome | 456 | Y |
F040290 | Metagenome / Metatranscriptome | 162 | Y |
F046961 | Metagenome | 150 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207665_1000002127 | F046961 | N/A | MKYMILLFVLAVLLPTIFGLFRDLFRSPSKKVTPVIEYAQKKGYRLVNPSASQIPGSSLLEMLKNPALRNLVDASSDVADIDGLGHASGGWLAFTSSLRSKEVTIFNCSTTGSINAGSRPIPYKVAKIKTQGLPRFSVGNNSIVRTVQDVVGKMVGEPKLAIDVDPRLYPDFSAHYWIRGSDAAAVSAFLSPEKMRFIETAKLPGILATNTNYLVYFEDGTLQTELDFDSFIATVEKLIPAIL |
Ga0207665_1000002130 | F000092 | GAG | VKQHLGRQSGVQTVDVSLLDGKVVVTPKEDGQIDPAQLLKATYDSGVTAAEMDMTARGKIVKDSSGSLALQVSPNRSFALTPNELSKGLEALVDTPTMVTVRGQLYKKPAGKKKADPSAPLKLLLLEVQKKE |
Ga0207665_1000002131 | F004042 | AGGAGG | MNTKKLALLALLASIVSPVSQAQIKHIEMRVEGMT |
Ga0207665_1000002133 | F040290 | N/A | MMRLAKPIFLAVLAVTLAAYALDCGATTPEQAMDCCKSMACSSHGHHAQDCCKTMQAMHAPFVQPSSAYGVSFSPHVFAVLPATAEPHALGPSGRVIAAHCHAPPIQHTPTPLPLRI |
Ga0207665_1000002138 | F001311 | N/A | MATQQELMTKKLPTGSSTKPISNTERRGSRRCKITQLMRIRPSDPKKDHFEDLRGSVSVSRSGVFFQSSESGYEVGMRLFVTMPYSKDPASMAREYLAEVVRRDVLPTGMFGIGIKILMEMGIQHAYHFGPGQSR |
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