NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207665_11041344

Scaffold Ga0207665_11041344


Overview

Basic Information
Taxon OID3300025939 Open in IMG/M
Scaffold IDGa0207665_11041344 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)652
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001173Metagenome / Metatranscriptome757Y
F027951Metagenome / Metatranscriptome193Y
F055971Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0207665_110413441F055971N/AAWSEGGYHGFTVEGGTWGAISSAGEVLTGGTPDTLNRAIRAHWQALRG
Ga0207665_110413442F027951AGGMSQGRDRPDLRVVDGRADPVLRRQRFEQAHPEAVILPPSAGRWRAIVPPGLIPGDGTRTTLGAWDLGDLMDQLDAIYPDSGRNTTG
Ga0207665_110413443F001173N/AKDLAAGRRTFADRLADRQSQTIPSEDPDYGDLGPAFPAWSGPPSGAILQPPKPEMTPSPQILQRAMDRDADWEAAD
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