NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207691_10557967

Scaffold Ga0207691_10557967


Overview

Basic Information
Taxon OID3300025940 Open in IMG/M
Scaffold IDGa0207691_10557967 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)971
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019847Metagenome / Metatranscriptome227Y
F028577Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0207691_105579671F028577GGAGGMRKFKVAVVKRGKEALWRDYWIYSETKGTTAEAPPDLGRTEVVEATTLEEAIDAVQRRNPDSTIMLAGEEHD
Ga0207691_105579672F019847GGAGGMTQSVLLVVVTALLTWFVMRWARTPDRLRSLSPQEKEAEHAKEIGTQLDGARDRAAVDEIERNRLALARAVKAALWVTEARLNLAVPELLKMAQLWVGKSELRGEEWTPPKGVTDIEGLDDAEAPWASWSFDGHHWRIEALWRPSAIPEEI
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