Scaffold Ga0207711_10522841

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207711_10522841

Scaffold Ga0207711_10522841

Overview

Basic Information
Taxon OID	3300025941 Open in IMG/M
Scaffold ID	Ga0207711_10522841 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1106
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080458	Metagenome	115	N
F095053	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207711_105228411	F095053	N/A	GSSPVQGDWEPTDRGGAAQDSSQGSTRDAQDHANAQVLMAQQVMAEQAKRMADFMFWQLILGGVLLIGVCVTIYYARQIARAAVNASPPAHRHADPTQRAEGARINQQRKP
Ga0207711_105228413	F080458	AGGAG	MADDKKKAERRHFNWQALKEAVERMKPELAAASEATHKHGADDTPDDSDFDRTVALGYLVESLEGLCGPHLWVLNEISSALYEMHAADGEHGEEKPRHHTH

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