NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207689_10609409

Scaffold Ga0207689_10609409


Overview

Basic Information
Taxon OID3300025942 Open in IMG/M
Scaffold IDGa0207689_10609409 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001778Metagenome / Metatranscriptome636Y

Sequences

Protein IDFamilyRBSSequence
Ga0207689_106094091F001778AGGAMSRFVDEGKRTSEPGPPPELPGAIERLTATFRELTDKRDRLEGDVEKLRRRLAEAEGELDQLQLYQLELSWRPPQLAEQRLEQYRDKLRAHLATVTSELDATKASIVEIRAVLVRQYAVAQASWRPADALTVPCPACGQPCVPHRAAAAGRGWRKGWYECPADDCNSAWSARWSGGV
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