NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207661_10429693

Scaffold Ga0207661_10429693


Overview

Basic Information
Taxon OID3300025944 Open in IMG/M
Scaffold IDGa0207661_10429693 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1201
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002196Metagenome / Metatranscriptome584Y
F016524Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0207661_104296932F002196AGGAGMDHLIEDTRVLLQAAREIHAERHGAQTFTPGTYLPLEEAGRRSGLNPNRQRYYDAIEDLEYEGAIEWDQSARYARGDKHYLITQRGLKMLQEPH
Ga0207661_104296933F016524GGAMSQPIRVEGWAYTPGTRISLRLRFRSQSAYARVRAEFRNPSGGVIKLGGVTHPREESGAAHTEVVLTGNVPENAALGTYECRSVDGLTEERSWAPLFEDPAFNIRVVQRPFHAQRGGEFLGLEPA
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