NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207679_10072999

Scaffold Ga0207679_10072999


Overview

Basic Information
Taxon OID3300025945 Open in IMG/M
Scaffold IDGa0207679_10072999 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2594
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090529Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207679_100729992F090529N/AMRKLIVTLTVISLSTPHVTLAQKILPRTQVQQRRAEKIADRFVDRFQQTLDFGSVWKEFRLSDPSCTHRANGNLSENDYAKLRLNGDIIEKLYIATMNLYYLKAVYELSHTRIDSKSEDVSTPAEIEVIEKRSKFFQNDDRKPQSYEEVSELIGTFDQLARLYRKYLPKEAMKSATWRANEKNLRSRSEIAYAGVLNGDETFCIAKGSNVYIVDRGIFYFYVVAEGDKMKVAGLGID
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