NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207679_11517946

Scaffold Ga0207679_11517946


Overview

Basic Information
Taxon OID3300025945 Open in IMG/M
Scaffold IDGa0207679_11517946 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)614
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter palustris(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028177Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0207679_115179461F028177N/APLAALAALALVMKDLNAEDDLAAATGDEPFLKWRKRTRLFQQVVVGLDTMLERWDTASQVNRRKLDMVNESVEEVIKLTENAVTEISKRFRVLVGKANEQTEAAMSLLKGGEDGAEGGILSLPEFIKAYDSQLVNVTSHMTSFSQAADEMASHQKRVSEHARVMEETIDGLRNMASQISRIALDGSVAMTSQTLSPRDFVEMTD
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