NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207667_10000602

Scaffold Ga0207667_10000602


Overview

Basic Information
Taxon OID3300025949 Open in IMG/M
Scaffold IDGa0207667_10000602 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46619
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (86.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045452Metagenome / Metatranscriptome153Y
F047388Metagenome / Metatranscriptome150Y
F067906Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0207667_1000060210F045452GGAGMTDAAANADTRRAEQARAGLLRDIRAIKDMGGKMIEKTETTLHTAPVLMALGAVGLALVGVAVVASRRSTPRFPLLRRERSFFAEAVRGAALSALGVLSGRVTQKLLTAAMAESPSSPATPAQ
Ga0207667_1000060215F067906AGGAMSRRARLTVLELGASPTAWASRHGLGADDWIVVAQQSDEPAPDFSERVRLRARRLRKEDAQIEAVDVYTAPNSDGPRSLARRDVIEELGDHMAEGGRLTLWSDSTEGAPEQHELSAILAQFGPILAERQIAMNHQTCEPDERSGVRHAIPQAPATGFDDLADFDDIG
Ga0207667_1000060241F047388N/AMAVSSESHSEAWRCAHSVRWRLLESYALARQEGLASPIGLIADLRHPRAAQVLRQLLLSPSATADQLYAGCVERGALCTALVGSAPALAEELFAHGDEPGTWTALVLQDEEVVLSGTWQELISGVSAKSGTGTGASAGQRGRRR
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