NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207640_11015129

Scaffold Ga0207640_11015129


Overview

Basic Information
Taxon OID3300025981 Open in IMG/M
Scaffold IDGa0207640_11015129 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)730
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015505Metagenome254Y
F058266Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0207640_110151291F015505N/AGTINDQTREVSSGTYFAHLFKLDADQYQLLSQKPRFHRDCEYLNRPYELSDLMRQATDAGVWPR
Ga0207640_110151292F058266N/AMKNDTLLIVFVTLYLMVIAALLIKDAPRPVALEDKAPVAEVEKAPIAKEAASPQADDSSKPGSAPDCEKELRRTADLLRFFANRIQGGEDTQSVVADMRQQEKKLSA

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