NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207677_11013711

Scaffold Ga0207677_11013711


Overview

Basic Information
Taxon OID3300026023 Open in IMG/M
Scaffold IDGa0207677_11013711 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)753
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005165Metagenome / Metatranscriptome410Y
F016609Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0207677_110137111F016609GGAGMAISQRLVDPYREIRVPTSYSWQDSYKAALLETDWTKMQERIRAAETALHDRKHQFALDHGGTPEENQAIEDALHGLGILRSEAAAWQESKRAS
Ga0207677_110137112F005165GAGMSNTNDATRQEWRQLCQAALFETNTVKLLERIACARKAVLDRIEDGHSKSPNGEQTALREALATLETLRRITERQNGYQSKAS
Ga0207677_110137113F016609N/ASALLETDWSKIGGRIQAVEAALHERKNEFALNHGGTPAENQAIEDALHGLGILRKEVVAWHESKRAS
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