NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207703_10685738

Scaffold Ga0207703_10685738


Overview

Basic Information
Taxon OID3300026035 Open in IMG/M
Scaffold IDGa0207703_10685738 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)974
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015118Metagenome / Metatranscriptome257Y
F092245Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0207703_106857381F092245GGAGMTLKRWMLGKTNDRDQRNAGMRTPTVPGGSAGVSREPGFSLFGRGVAIADEPVHLGPYAPLIGAIREELEQFVTNQLRLHLAIAERDRYVLASIEVECEGGEGERELLRRFVREFRPEQIKLYLAKEIIAGLRNASAIDLSQFAGLNA
Ga0207703_106857383F015118N/ADPNDPRWTKAIAVLTERNWLADTGRVHGAGDRGPNPAAEIAMQIAGRHAGAIPWSRE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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