Scaffold Ga0207678_10006693

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207678_10006693

Scaffold Ga0207678_10006693

Overview

Basic Information
Taxon OID	3300026067 Open in IMG/M
Scaffold ID	Ga0207678_10006693 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10219
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006359	Metagenome / Metatranscriptome	375	Y
F019739	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207678_100066931	F006359	N/A	LVMDAATKFIGGAIGRRVKRAYEERVVPAVSAKQDAMLREQIAIAERYPDLRACLTDNVVFLAGGRRVVPMSSLTRGFTLEQADAVVAQLRNG
Ga0207678_100066935	F019739	N/A	MAEEWRVSLVIGGGGSTVKGSRYRDLLRARLGDDVAVSAGRMHLFLYAGSAKAADEAGQVARAVLEEHGQFAEVRVERWDPSGGEWRDPDEPTEHEDPPEPGRLQTTAVAFIKGAGQALARGDLA

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