NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208261_1000002

Scaffold Ga0208261_1000002


Overview

Basic Information
Taxon OID3300026076 Open in IMG/M
Scaffold IDGa0208261_1000002 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)193032
Total Scaffold Genes232 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)107 (46.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-0.4612Long. (o)-23.033259Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007227Metagenome / Metatranscriptome355Y
F018380Metagenome / Metatranscriptome235Y
F097489Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208261_1000002130F097489GGGGGMNNNIFLTNEAARKDPVVIAAMKSILKQMSDEHDRHVAGIAPQTREVSPVNFLQDVLDDLGDPQIRNREREEYFRNGWGDSVNGVWQ
Ga0208261_1000002221F007227N/AMKKLTKEEIGYKTTDKLSQMWLLNPHDHHFLYQRDDGSYYGFSHIKGEDPEEWFWEAHGIQLELFPKEPPKSHKFTQEQLDRAPHHNILEKYYGKDWKPEPQEGLEDHY
Ga0208261_100000258F018380GGAGGMSHTFTFTDDELQCLRVCLQNAPTPYHISKKKIVSELEDKIGKPIKKEVEPLSLPKYDLSKYGIEQ
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Institute for Fundamental Biomedical Research
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