NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208261_1001389

Scaffold Ga0208261_1001389


Overview

Basic Information
Taxon OID3300026076 Open in IMG/M
Scaffold IDGa0208261_1001389 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8623
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-0.4612Long. (o)-23.033259Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001918Metagenome617N
F002334Metagenome569N

Sequences

Protein IDFamilyRBSSequence
Ga0208261_10013895F002334AGGAMTLGVFHQVFNQPKATEEAIKSFRQFHPKNPYVLIRDGDNGEDFSGIAKEYDCLYLTEEKNLGYRDHNHQSGIYGMTKDEVLIWLERFRMACTLCNTDHIIMMEDDVHIRGEIHVPEDWQFAGQAKPGNLLQEPFTDYLTEKYGVQWNVTYYGTGGGSIFNAKTFLENYERVIPIFEEEFDFIKRELCGNLGWVDVWMPMYFFLCGKEYRHNKLLTETTSNPIWQISKEPIVHQYKVHY
Ga0208261_10013897F001918N/AMKIALCFAGQPRFIDRMNFDNLTKDHEVVTYAHFWWDESYRGDFFAWNSNLKYPDDYDPIADFEEKMKPKGLKWEEYPKFDLSGFKMVSQMEFPLDDTVVRQSIFRQKCQWTSVKNVVNMVDEDFDLVIRMRTDVEFPERVPLEECKGDGLSMMNGAMQAGAGREYCDWFYCGPVNRVQQFDPLKVYDEFYKDGIRHMHELVRQTLASLQIPHRVLDLKAWMTDRSKVK
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