NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207702_10011102

Scaffold Ga0207702_10011102


Overview

Basic Information
Taxon OID3300026078 Open in IMG/M
Scaffold IDGa0207702_10011102 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7518
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000309Metagenome / Metatranscriptome1327Y
F018587Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0207702_100111021F000042GGAGMTNTKFVVRVNHGSTRAPAYVQRFDRLPAQMTTNRKLALIMGKLTAEDAAKAIENSRCVPELVPVHVNA
Ga0207702_100111023F000309GGAGMLVTWSDFMRGTQTGLIHIEYSCAPTGTLEYVKVWSSIARGHWLLACEYWTSANTFHGTGVRFDNGYESEGLAHILESVMQHQNSFALPLNLGRQGLLQISTPTVEESAAAAALINEVFDNLSSTFEEPAVA
Ga0207702_100111028F018587GGAGMSFAPHPFLASLRSLLAFLDASLRKFLKIEPHVGDFASQRICPSCGLITPRHESCCLECGGTFKAA
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