NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207963_1051426

Scaffold Ga0207963_1051426


Overview

Basic Information
Taxon OID3300026080 Open in IMG/M
Scaffold IDGa0207963_1051426 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1066
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015491Metagenome254Y
F028526Metagenome / Metatranscriptome191Y
F033080Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0207963_10514261F015491AGTAGMKQTKRQRKTKVPSRPQVTPRKWSKKTSRIFDKQFDRFLYDELYVPTKKAWGEEIVKYERDMFGDSK
Ga0207963_10514262F028526AGGMEEYLGPIGMKPELFLKLVRKVQKPDYTMHFMEDRNGRKVMFYNYKGEDFAEGECVLLKGTIAEHRTSKFDDGKPLTYINRVTIVKNMGSKSSQKNETN
Ga0207963_10514263F033080AGGAMLEYVHRIAEKVANEPLEDELRNWIIGETEDGHMPLVRKPQHVIDEDRGDEIRQSRKEQAQREMYDDPVMNWSGLR
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