NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207963_1054243

Scaffold Ga0207963_1054243


Overview

Basic Information
Taxon OID3300026080 Open in IMG/M
Scaffold IDGa0207963_1054243 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1022
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002874Metagenome / Metatranscriptome524Y
F063775Metagenome129Y
F068113Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0207963_10542431F068113GGAMRNEIEKVLEAMREDYKRWSGRCAQHETSARYIEIKSEMEENYCNGLEVKENSRYWKIIGSNGGGSQRSVKGFIV
Ga0207963_10542432F002874GAGMREKIDLSLNRSLPELESSYWEFIDATEGEDSTEWSGSVQEDISALEGYLMKMDIL
Ga0207963_10542434F063775N/AMREKTDLSLNRSMVELCDSYWEFRNSDEIKTKEEENEFGALEDCLEGMGFVSHLM
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