NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208880_1000001

Scaffold Ga0208880_1000001


Overview

Basic Information
Taxon OID3300026085 Open in IMG/M
Scaffold IDGa0208880_1000001 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)236366
Total Scaffold Genes251 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)203 (80.88%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012349Metagenome / Metatranscriptome281Y
F028183Metagenome / Metatranscriptome192N
F040347Metagenome / Metatranscriptome162N
F080078Metagenome / Metatranscriptome115Y
F080917Metagenome / Metatranscriptome114Y
F090459Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208880_1000001110F040347GGAMNRWDVTVKQSNYDFNPFRESDHGKSFRTVGNIEPTWKDEIPIANANQYDFYWPSPVSPEGDSFNYDYEELLCKDWGIPLDFVVYRQWTTTDETPILNSLAEQIGLENAQTNIQTQHTGMMLHLHIDSLTGLRKERTDQTSSRATDDEWGRCFVMLDDWAPGHIIQFGNTYVPPWHAGDVIWFDWANIPHSTANTGPWPRNIAKITGKVTQRYKEFVGI
Ga0208880_1000001115F028183AGGTGGMTQETKSMFSEETKSTPYCRELPTLWYDREYLLDHLENIDNEDWYQFDCGHIRWTVHEAFNPRLECKNYKWSEFHYELAMLFKPAITPDTMLYTSTPIGGTPPHQDRNRPAVLNFAVRGKFEDVSPQTFYEDFDRSTKKYVMPYSVSEKTNEFAPWMFKGPEIHGVDNDADEDRVIITSCWRHNSYSEIEQGMLDGSIINWEQNEKNKRIKFL
Ga0208880_100000120F012349GAGGMPATLEVDIEWNEHYALWPVRSSWSKNRIWLKKYWQGDIYYDAMGRPPIKEKSWKLIYTENEYLMYLLKQDENKYQHPLGAPVFKSVRAK
Ga0208880_1000001251F090459GGAMDIKKRIMDTKLFWRLYFWWGIRQARKRRIAREAEMANRPTMTNDEYWEKVHNDRTNNL
Ga0208880_100000160F080917GGAMPLPEGRKALTDQDMVILLHNIARDLENTDLRLTADRFSELAKAASEAQHRAKQG
Ga0208880_100000175F080078GAGGMQHPIEEWIRRINAMKDLCIQAHRVRNEFAEISYKQYDESTCKHLLEQVQSMAAGIANEKITDIKTEMDEWKKND
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