NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208880_1008857

Scaffold Ga0208880_1008857


Overview

Basic Information
Taxon OID3300026085 Open in IMG/M
Scaffold IDGa0208880_1008857 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2055
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061292Metagenome / Metatranscriptome132Y
F102575Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208880_10088573F061292AGGMNIKTLKNIMKEVNEPNEFVMTPHNLVHPLYWIWKVENCRLKTLDSRLSTKRKEQNRFDVFVWGGYIAPRDYRYKQVGNDFHIEFIRANFPATIENPNDPNYGQPWAFEVDDEVKIEGDLERVR
Ga0208880_10088574F102575N/AGFKFRTRIDSFDNQQEVGEGSERIIRTSFTMVVNAYLLPETYDDKPTVRKSFTPKKVVWGVETDLTGQMFTNPNIYNEYQNVIDFVAIRSSQRAELVSTPAEMSPAQTNGGIIKITNVRKPVLPTELIGSFDTLNWFRVYINTEFKPASTYTYSFNGVTNEISFTFNETLGFALDSNDEIDIVGKFEQLXI

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