Scaffold Ga0207641

Basic Information
Taxon OID	3300026088 Open in IMG/M
Scaffold ID	Ga0207641_10000259 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207641_10000259 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67298
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (61.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

67298

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (61.11%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041795	Metagenome / Metatranscriptome	159	Y
F073728	Metagenome / Metatranscriptome	120	N
F089071	Metagenome / Metatranscriptome	109	N
F093464	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207641_100002592	F041795	AGG	VFVCSWLISAALPGCSHAREHALLDQFFAASRLRDLTALRNVSNVVFEPREQGTVLSFEIKSVEEVSAGSKVVRVDAQVRRPDGQTAREILLVTISGRMITGVAVVPSTPRS
Ga0207641_100002593	F073728	N/A	MKSSGTIYVGATFALLAAYFSYQWWFNPSRALKRQMGEVAAALSVPAGESDVARIARLAQLGRHLADNVRVRAGDAEISSRDAILSAVNAWKPPAGGIDVRFVDTQVFIDSESQARAYMSVEVATPDPRGGQPAVDRQEAAVRLEKKDRQWQITNVELKGPPPLR
Ga0207641_1000025930	F089071	N/A	MIGGLAIFGSTRPLFAEPEPPPGSFLVYVTQASYSVNLGPAEHLLVFPIAVQIPGAALAAGPYIFRLVTPSLVQVMSATRSKVYATFFALNDSGDGDIGRERIKFAQYPEDDLPRIVGWYLSGGTGYEFVYPKPKRPPERVRER
Ga0207641_1000025950	F093464	GGAGG	MTPGTWLLKFAPLVFNERFIEIVVRPTIADLQSEVAAAGSNHVKRVRARCRGYAAFWTLMLVAPFASWSEERANVASGLAAGSVIVTLLTVVALGLWTALVAAGATLVALLLHTWYERHPSEIAVPPVAWRSPQINFSSTDIAGNIGGLIFVVGSVLIVSLALPSIFWFLLTGGIAACFVAWGLAAWHTRARKADWTCAERPPRLLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207641_10000259

Overview

Ecosystem & Geography

Associated Families

Sequences