Scaffold Ga0207648_10388268

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207648_10388268

Scaffold Ga0207648_10388268

Overview

Basic Information
Taxon OID	3300026089 Open in IMG/M
Scaffold ID	Ga0207648_10388268 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1263
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090182	Metagenome	108	Y
F105781	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207648_103882681	F090182	N/A	LAKPTFDRLLDGLARLCLRHSKRIAIIALFVAAAAIWGASRISFDPDLLNLIPQKNKQVNDFRKVLRDLGTIDYHIVVLDLPKGHDVHEFDSLIDAIAEGYRKNPRIEDVSYKIPNPLDFIEDVLPRALLFLTPDELKQVETKLSDAGIHESVSRNHAMLQTPQAFAMKPLVQYDP
Ga0207648_103882682	F105781	GGAG	MRRKASQENLLLRLIAFSLFLLAFGCPKGEPLTAQKAEEILRAYEVSTEPIYAEVPQRVWWSPKAPQDAYDVKALETLRNLERAGYLTVTESHDGDTTSYTGKVTQKGFTLIGTAPSNRGPCFRATICFKKIDGLRNFERHPNEPTTGHGDLVWHYERPTPMYELFTTKINKELQKPYASAVSFFWKDHAWHFDVMVRKSAV

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