NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207648_10799930

Scaffold Ga0207648_10799930


Overview

Basic Information
Taxon OID3300026089 Open in IMG/M
Scaffold IDGa0207648_10799930 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027888Metagenome / Metatranscriptome193Y
F031679Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0207648_107999302F027888AGGMTELDVIRKDAIRLAAVVVNLSKKYKPFQERVRGLGYRALNTSQLSDLEHVCQELRTVYASLLAVEGKALAQEMMDDPDLGLEQTASP
Ga0207648_107999303F031679N/AHLLPAQPAIIIMACLFVVVAALWAFVITKAMIAIGISAMALCIAGAGAFAHRHALKPL

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