NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208624_1013250

Scaffold Ga0208624_1013250


Overview

Basic Information
Taxon OID3300026093 Open in IMG/M
Scaffold IDGa0208624_1013250 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_DCM_ad_71m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2725
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005533Metagenome / Metatranscriptome397Y
F021120Metagenome / Metatranscriptome220N
F034958Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0208624_101325010F005533AGGMSYTKNEIALETLISNINNQFYYIGEEDDKVAPIDVKKFT
Ga0208624_10132504F034958AGGAGMKSEVDQIIENLKFCIETIGLNDEQTGDVLNATNELGVNVEYFCNEFMETSSKQVHEDDYLNIALFNAMYWEF
Ga0208624_10132507F021120AGGAGMKVFTIQFTEDELTELENVLDQHVYAEAIENKGSEGTIGTIHNRILDVHYQNSDGVVPVVKATHKHFRKDLDLL
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