Scaffold Ga0209937_1017635

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209937_1017635

Scaffold Ga0209937_1017635

Overview

Basic Information
Taxon OID	3300026094 Open in IMG/M
Scaffold ID	Ga0209937_1017635 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1578
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4968	Long. (^o)	-122.1333	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F063375	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209937_10176352	F063375	N/A	MTAVELSDRQLTAIETVGGHLQTVIAYGGVFMAGVIIGFESSVYPMMWPITQSYTGKAVTYPYTQMLEIGIGILAVCVMMIILLEWVVYLHER
Ga0209937_10176354	F005874	N/A	MAMIPNDPPDDELTPRQLYDRFEDAVNLDVEELRAFKASEYNEAYNSMKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEARELLDFQRRTQAQIKSQGLGENYLTEDRNMQKREAASIRWGIDPDDEREWL

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