NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208560_1002086

Scaffold Ga0208560_1002086


Overview

Basic Information
Taxon OID3300026115 Open in IMG/M
Scaffold IDGa0208560_1002086 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1677
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)9.7046Long. (o)-55.3027Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039681Metagenome163Y
F044724Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0208560_10020862F039681AGGMATSTGFEIGDPTKLRIKPTYNVGDYGHDVSLPLLLAQSTNLVTLTPSTSSFHQTEHDSALPIDEVLSFISESDKCELLHNGNDTDFDKTWLIQSDMSFFSYKIALSFGIGMKVSAYTSGNITAESIRLTLTELGDGVGDIVIADLTIPTGASALSATGEQIIMFHADILQKIKFTNNRPVTMRIRTVSSKSGTATYQIGMCPVYPMISTAVPKQWLLSQVEIHAHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALGEMGTV
Ga0208560_10020863F044724N/ALTAGQSYLTKCIIESNSINLLPKVFQVPPIMGGLGTFTSSLTPILDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESTPTMKEKFYDMPTNETSSGTAATSVAGENVTINDGVFLEDIIPTVVSGVVTASESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGIAKNPHYTNIHMPMKSSCLISHSYVQDEALTATGAFTITYGYTKS
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