NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207683_10175516

Scaffold Ga0207683_10175516


Overview

Basic Information
Taxon OID3300026121 Open in IMG/M
Scaffold IDGa0207683_10175516 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1942
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011819Metagenome286Y
F059089Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0207683_101755161F011819N/AMKPESTHPATFFFAKPKEGLAGGTTTAKTSPPPDDGSRIADTGAMEEAGAGAVEELCTGGAVDLGTKATKELDTGASEEVGAGASEELTPDLRLLQKVQD
Ga0207683_101755162F059089N/AVFYPFSQELGRNFIDPVPPDVLPAVAETGDRLAGTSAISKSQTSTALPGVSSGFVDVYEEYVPRLVPRGPRSVPKRGRTDGSSSGLPVSKKPRKPSTPSGTPVVASMLLGEHI
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