NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207683_10272582

Scaffold Ga0207683_10272582


Overview

Basic Information
Taxon OID3300026121 Open in IMG/M
Scaffold IDGa0207683_10272582 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051757Metagenome / Metatranscriptome143Y
F080250Metagenome115N
F093961Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0207683_102725821F051757N/AYLHMKEVRSRLKRDYRLRSIGSRLQRELTKAFLSGAEVIEQVLVDGLTEPAAYKREYDNLREYVFAGKRDQLWNVIPDSIQTPQEIQAYTERLQRNLKSRDRWVRTLSALTLEARRG
Ga0207683_102725822F080250AGGAGVVSKRRREVIEEDPLRRLRDVRRAIYSERDLGLAAAWKAPPKQESSLAILIREPSVPIERIADVLRAECAKCGRGKPGGAHWRWTKLHYLIAHFIEQSGAKRTDGCIRDWINTVNGWETMHGRQRLDPQPGSRDHARIRELLRGPKSRRL
Ga0207683_102725823F093961N/AMIRGTAQSAAYAGVHMVFKIYRAGDLHNKRGKSGIFNVGRTHFYEVIEPRLEKICLGNRAVGYTDRSVERVQAEMIAEGAAARITKTARSPSPAQADTASNELAARRG
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