NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209962_1044080

Scaffold Ga0209962_1044080


Overview

Basic Information
Taxon OID3300026125 Open in IMG/M
Scaffold IDGa0209962_1044080 Open in IMG/M
Source Dataset NameWater microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)759
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4965Long. (o)-122.1329Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029115Metagenome / Metatranscriptome189N
F038744Metagenome / Metatranscriptome165Y
F044513Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0209962_10440801F044513AGGAGGMTKNSWILKQIYTDAKNNLGWLFKVILMAGGFIAGIKLLMFFSVPKE
Ga0209962_10440802F029115GGGGGVVDGITVHVIMNYKPFNKKELKMDTQIEKKIIDFTRLTGLAERITMSHGTLYVTLHQPEQCDHFHKVIRTFYVDNINQDGGVNMYAVGDEFAFDFVPEDREAPVFAEPYSDEKYSGKEIMDNTEMGIWSEFAEEELMNNIPQDVDTMLDLENDAKEGR
Ga0209962_10440803F038744N/AQKIELENQLELLGYSGNLVRMHQIEEEIYEIQDTIRKLLP
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