NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209961_1025484

Scaffold Ga0209961_1025484


Overview

Basic Information
Taxon OID3300026130 Open in IMG/M
Scaffold IDGa0209961_1025484 Open in IMG/M
Source Dataset NameWater microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.496Long. (o)-122.1329Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012221Metagenome / Metatranscriptome282Y
F104070Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209961_10254841F104070N/AFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYT
Ga0209961_10254844F012221N/ATKKKEVKFDFTFEECDFSAETFKNAIIYSKSGFGPRMGFKASTSGFGVYLEGRFKGAGSQVGAIDATKIPEEIKKRYNYTIRKGGTPDLKVEEPIALKEMKEMIKRHGAKKISNGLDSYKHFLELYDKAPLFQKQRFCRISSFMYPYLELSFDKGDDKEFKDLMSWSYSLAKKETDVGGFYIFLGP
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