NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208405_1003347

Scaffold Ga0208405_1003347


Overview

Basic Information
Taxon OID3300026189 Open in IMG/M
Scaffold IDGa0208405_1003347 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2693
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004325Metagenome / Metatranscriptome443Y
F008031Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0208405_10033472F004325N/AMKHKKASTSEKADKFLQGIGTAGGPIGSPQLIGFGGTDTMSQLAAGNRDEYANIRMREGDTRVVEGAKMPSDLDASYLKLNLPGSPLPANGLLAPQNMRAAEQTQDIIRSQEQMFLAKFIPAAGLMQLPVGQPPLESKKGKK
Ga0208405_10033475F008031AGGAGGMATYKSDAGAILEPGNQIGRLSSFNHEGVKGWPGVEAFELIGFHKLSNKSGSKANHKSFNITIPSPDRRPDDRVRSDRSSLVVNASSDRPAYIYGASIAIGQDIPSGGLPSFPASPVTADIGGTNTEVILLGPDNGGAPLGVPSTQQNGLAAATSTLTFSGTTISQGTSNVSVGKLPFWTVVTGGGITAANAANSMM
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