NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207987_1006879

Scaffold Ga0207987_1006879


Overview

Basic Information
Taxon OID3300026190 Open in IMG/M
Scaffold IDGa0207987_1006879 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1761
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062152Metagenome / Metatranscriptome131Y
F076483Metagenome118Y
F099435Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0207987_10068791F062152N/AIIQFVGHTMKLGNNLNFKEDFKMGPHYMNELIKHINKLNEETRKSGAVGFLTNDPDHWASYGVYTIGDFQLYLEREHERNMYKNNF
Ga0207987_10068793F099435AGGAGMLMIKTETLKEIEKCEPKRQTALMYVVENCSSYKVSHTTENEHWLCGSVIVTHWNHDTGYTTKYKGVRYPDNFESWSFHNDKLASEAFKSQHDIGIDARGLSQKEVLTISPAELRRRLYN
Ga0207987_10068795F076483AGGAGMQMISKNILSQIFKEHNIEVDRISKIRTLQALLNDTTLDIPLMRREVTTQNAHWILRNIKVNNAEHININKIIKLIKEVI
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