Scaffold Ga0209313_1043863

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209313_1043863

Scaffold Ga0209313_1043863

Overview

Basic Information
Taxon OID	3300026198 Open in IMG/M
Scaffold ID	Ga0209313_1043863 Open in IMG/M
Source Dataset Name	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C13 SIP DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1141
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location Name	Washington, USA
Coordinates	Lat. (^o)	47.6525	Long. (^o)	-122.3049	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F092293	Metagenome / Metatranscriptome	107	N
F092294	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209313_10438632	F092293	GGAGG	MTRPPALTDRQIQIIRENLDLFPADILKLPGFADADITRHTIRNYQRRLKNAAVIDEEEDLLARLKKHIDRHGLESQFHGPRGVTGFIRHLETKIHLRAIERDNSENTVS
Ga0209313_10438633	F092294	N/A	MSCGEKSNAFENLHDVTLQRLDVYHRNNGRYVFYGSQHFAPTVDHWNTVPVIYVETEPGKPAEHPQFEDVITRTLPAKFRTVGSVSAVHLTESGEKALKGAIAFSDPAIEAKAAAGELSLSTGLASPEAPDPRLPGATKIAGPVTPNHVLVFDRGACPNCYPNDSGAMFHNLQVPDMPDDETKGLLKTI

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