NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208131_1084806

Scaffold Ga0208131_1084806


Overview

Basic Information
Taxon OID3300026213 Open in IMG/M
Scaffold IDGa0208131_1084806 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023875Metagenome208N
F048555Metagenome148N
F049935Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0208131_10848061F049935N/AMQTDIDFEFWDAQIKHFISIIKSDSASKKNKKAAKTHLIEIQSRLKRDVRDLNKHIKEL
Ga0208131_10848062F048555N/AMKSVTITIGDYDLEIIEQLFENEEKFEPSDPRDELMIEVMRQVKDNPKVDLGADEAAEYEKAKTRFSKNLGADGKRIVKRELPITNKIS
Ga0208131_10848063F023875N/AAIILCLYDITFTHSLFWIIMLLFSLIQFFAYANGLRAQLERQFLKDYNEAVKKTLEEQQQEEYNQIRNN
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