NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209750_1005251

Scaffold Ga0209750_1005251


Overview

Basic Information
Taxon OID3300026237 Open in IMG/M
Scaffold IDGa0209750_1005251 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3635
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209750_10052513F066811AGGAGGMQFNNPPAFTAPSMADILTAATSIFNPFVSVLALAIGVTLGARMLGRIVNLF
Ga0209750_10052515F000855AGGAGMDWLEDFWSKIVGWWDHASANVYNGIVAFINSLVEIWNGWMDALLHPAQAMPSVPALRFIVDWLGGIVDYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLGFRAWLVIRRVVLVS
Ga0209750_10052516F001381GAGMQYVVATLYVLLWLALAAAAALVLPRWALPAALVQLAVAYVMLRAVWLTVARDD
Ga0209750_10052517F000642AGGAGVQEIGIALALCAVAAAVWYMRRREAGAGRVRGWLLLYDDVGGWRALPASYGDSGVVADGVTYPASLPVLRVDRTLIWIARCDAAALIEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK
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