Scaffold Ga0209750

Basic Information
Taxon OID	3300026237 Open in IMG/M
Scaffold ID	Ga0209750_1010580 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209750_1010580 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2248
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2248

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.534	Long. (^o)	-110.7978	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.534

Long. (^o)

-110.7978

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209750_10105801	F024322	N/A	MSLLRKLRNARQWRYLRLVDPVLQRFEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFAREYDVSTYAFPFSAEERVAFHPPPIFVAHYNEFSQIAARQQDAFLAVIPDARMGKSEWGEVEHEAFFFAPALDTEEFEVQLDRIAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINIKDYELNAV
Ga0209750_10105802	F044249	AGG	MTKRDAILALLGASLTIVAKKYIMVLAALIVLGSLANFLGWVYAIVSGEGIKAVKVLQGTARLVFYIVFYLALLVALEQVATYLIPPLLSVAIIYEAGLALKKAVQLNIIPAGLVRQLTKVFRHEPPEKAP
Ga0209750_10105804	F038584	N/A	HATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRSARKLMQRYVQKTIVGVNTPREYIGEAFYVTRQPVIEFIQDYLRTETLEVLAEITQVRLNPFTGAPAIVGEGGEKPTMATTPQRVTSNYQKIAFGDVITDEVLLAYPDIVDFLIWHGAYRLEVFLHNALVTLLSGSASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWLANAAIVPFPYYWALVFGALKSTTGEYLQLDRQLQGLSLIPAGAAQTAPTIVFNENELEVFFLGDITVNFGRVLDAASDTNVRRLSMDLFYAPLPHTGRPVIVANTQNAINSMV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209750_1010580

Overview

Ecosystem & Geography

Associated Families

Sequences