NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209750_1013081

Scaffold Ga0209750_1013081


Overview

Basic Information
Taxon OID3300026237 Open in IMG/M
Scaffold IDGa0209750_1013081 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1949
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y
F085751Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209750_10130812F018115AGGAGMNDAEERFVRRYAHLAADAPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFIYRHWNDALSDAARGASLCLASRTLRALDCLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD
Ga0209750_10130813F005028AGGAGMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTFIRYFLRYHIPALRESAAVGETYIDPGAAPEARLGLCWRLDDAVLTVYTDLHAAAKRLKQPYRDLAAVCLRWGYVHETVVQLLAKTLERKAKDVVED
Ga0209750_10130814F032180AGGAMWWKIDPIPHQELEEWERAVGRFERAAKRDVAVRAAGAFVIYDLNGALGYVAGREAPEGAYLVERWVRGKRGWTLYE
Ga0209750_10130815F085751AGGGGGMSDLIAWIIAAGVIFALVNSNVADGLLSALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDFGEAVALVDVWRRGG
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