NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209750_1018869

Scaffold Ga0209750_1018869


Overview

Basic Information
Taxon OID3300026237 Open in IMG/M
Scaffold IDGa0209750_1018869 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1507
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F063723Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209750_10188691F063723N/ALVGNIPVRGARRIFTLDDLAALRGAVLVWDEVQVSLDSREWASEAARCLTRDMILWGKRGVVCVYTSPSFQTVDVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPALAPARRRG
Ga0209750_10188693F008135N/AMRAMNDPRTERVLTEAGAGIARVLDDRQRHAVALAIEACWYIVAALPPDSSVTFGDVVRLLRWFARGFNEDVEAGDGDE
Ga0209750_10188694F002795GGAGGMATNNRLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFLRDGSGRPVIRLYVDEGVR
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