NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209750_1045659

Scaffold Ga0209750_1045659


Overview

Basic Information
Taxon OID3300026237 Open in IMG/M
Scaffold IDGa0209750_1045659 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)818
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021779Metagenome / Metatranscriptome217N

Sequences

Protein IDFamilyRBSSequence
Ga0209750_10456591F021779N/ASETQPASITITFTNRAGTVESTYSDTILPLSSKGYNTRFGGNLPVAQRDLIRGLDQTSPPGTSSTPNFLGSAQVTSSQPLVCIAKQLYDKDAAAIPPGSPASEDPKTRQSLGYNGINLSDAKTEIFLPIAWRINAQPTCGFWRYTGLIVQNAGTANATVTVRAYTTAGALINTYNDPVPLPPLTPRGYNTRFEAYSTAVGDVLGFNFDGVLRLTSTQPLVAVAESWQNCSSGFSPMTDSNITELN
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