NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209549_1009925

Scaffold Ga0209549_1009925


Overview

Basic Information
Taxon OID3300026249 Open in IMG/M
Scaffold IDGa0209549_1009925 Open in IMG/M
Source Dataset NameUpper troposphere microbial communities - SDPR-005 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Source Dataset Sampling Location
Location NameUSA and various oceans
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036741Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0209549_10099251F036741N/AMNHKEFFKILVGNPPPEIEFEIEVKQRETEQMPDEAVRAYCLDLVKYTRLQDLLLSSAITRISDIETKLMRYEKGMRLYKKVRKLGFFGKIKYLLSG

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