NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208879_1072811

Scaffold Ga0208879_1072811


Overview

Basic Information
Taxon OID3300026253 Open in IMG/M
Scaffold IDGa0208879_1072811 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1555
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045159Metagenome153Y
F080148Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208879_10728111F080148N/AEALRTSATALGTACGERVVEIDARIGAPVYANSTGAGTTPAGRGSPPRIRVKTIPTANTTNGYVPYGRAIYDNVNLLLGGDVDILGGIIKDIESLGDLVDLVKKARNKYEIYNGRAKEY
Ga0208879_10728114F045159N/AMAEFQALQTATAEWKPHQIAKAGDIASMAEAAGDLANVVKETLSLASAGMEVVKLLAQLQSINPLLIALDALADEVLIAIQNIKEAGFWYLYVDPYFIKNVAAEPAFTYGFEQLRNPAGDRLW
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