NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208879_1169587

Scaffold Ga0208879_1169587


Overview

Basic Information
Taxon OID3300026253 Open in IMG/M
Scaffold IDGa0208879_1169587 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000942Metagenome / Metatranscriptome826Y
F029555Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0208879_11695872F029555GGAGMSDFKGGYRTEVARYELIPGERVEYEKYIETHELIDLAGRIERGEPHPVNPAYGGDGYVYLYPEEEDLGRVKVALLNSKWYLEWEDGR
Ga0208879_11695873F000942AGGAMSNPFELRFRLLEMAQGYLQEKQSRKTEFGYQAWDLAKENGKANMELWKELQPDSYTIEDIKKKATELYEFVEKK

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