NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209350_1000106

Scaffold Ga0209350_1000106


Overview

Basic Information
Taxon OID3300026277 Open in IMG/M
Scaffold IDGa0209350_1000106 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53608
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (85.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004460Metagenome / Metatranscriptome437Y
F084073Metagenome112Y
F085462Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209350_100010616F084073N/AMTKKMSKGEKRFTELVRQRMKESRSTELLGFDVESVHAGRAIFRLDVKPNHKQVHGVVL
Ga0209350_100010635F004460GGAGGMLNLESGDRIELFYEDAPARAIRATVSRLLTDRDEGMGTEVEDYTACWIVITVDEPSDMDAQQVLLFGTDFQYRLNGRPITLRKTQD
Ga0209350_100010647F085462N/AVKNRLVLGCGVLLSSCLSATAQTGPIRLTLMPERTSPVVVATAASASLPREPFVQALSLDQQPSRFSFLLAAIRNRDHRLERLFQADVVKTPFIRQTGVPVFGLWNGRLQLGAFANTRNFENTQLDPFCSDRFRCIGAPGLRAVGSRGVSLTFRLDRDAFAPRPGNTWRCLTWLLGAGPGCPL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.