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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026277 Open in IMG/M |
| Scaffold ID | Ga0209350_1000125 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 50299 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (79.59%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.73825 | Long. (o) | -123.6301 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005666 | Metagenome / Metatranscriptome | 393 | Y |
| F007493 | Metagenome / Metatranscriptome | 350 | Y |
| F026411 | Metagenome / Metatranscriptome | 198 | Y |
| F027294 | Metagenome / Metatranscriptome | 195 | Y |
| F041398 | Metagenome / Metatranscriptome | 160 | Y |
| F080432 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209350_100012525 | F026411 | AGG | MKGQEQKDSAAPMGTSPAMECRAEFIFYARNQSRKLGSVEVLGDYTCDFRRPDWAHRWTDWNSGRNQYLNLFLCAKHARELGLL |
| Ga0209350_100012526 | F027294 | GGAGG | MRVFRGFAIALMLALISLGIFILYNSMARRSAAAADSVIAGAVLFSLALTLLYYISRPTI |
| Ga0209350_100012527 | F080432 | AGGAGG | VEIQKGERWRCQNPVCGSEILVTTSSRARGGSNPRCSCGEIMKKPYTQPGLRPFESEVEARVKLEASRD |
| Ga0209350_100012528 | F041398 | AGGAG | MTKSRTLAAFAMFVLSAAVAVFSGAIPVPFLNAGKHSLPAIQSNGAVTLIADGGDPQPPPTPLPWLV |
| Ga0209350_100012530 | F007493 | AGGTGG | VIGTTTALIGAAVLLVLILVWVRGQSASRHLPAVMDEWLTGQDDLPEACPPEFVSKIFSSRDSEFISQLESVDLKRLFLRERNAVALLWVQQTAATIRRIMRHHLEASRLSADIKFAMEARIFLQYAQLRLICGTLFLLIGLAGLERLHWMALRADKLTQRIGNVLREFESGARSREMDGVQS |
| Ga0209350_100012541 | F005666 | GGAG | MKAVMVRISLFVAALAAMCVADVARAQAPLEPTQMSPRTMFYMIWRGVPPSEVRKTNALLALWDDPDFAPVRSAMAAGMLGSSDEKSTQPKLTPEQVQEFAGLLENSFTLGYWSEPTRRNLSTGAAVVDAKTPAWNGMFFVYDRTGKEMLLTKAVLRMRAEEKEAPRLSQVAIAGVQVLKVEGKSGATYWAEHGKYAVSAGEKLVMEDLLSRLDGKVAAGGASLAQSAAYQEAQANLSGGLLEFFLRIPDLKNLANDSKAGMFQMRPLLDAARLDAVHLIGGHVTFEGAKTHVQAAILGEAVPGTPFDIWSAGERAPASLALTPADAVSYTSAQLNFQGIYDTVKRVASAAFPQAQQGNVNLVDAMAQQKLGMPVADALGLLSGEFASMQTSPSLDTANQVYFFGIRKKPETLKLMRTVFSDQITSERNEGDVTFVKISLGGKQATEGVAQWNFFNLAVTPDMILGASKMDTLREALARRGGGTGGAGLASVPQFAAERQQFPEKLIGMSYFDFQKVDWAAARDRWVAESKKSSVVKSMNSSGQSAAVTSVNEWLLQMNPQVISRHLHRSLSVSWKDSKGIHWDQWVE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |