Scaffold Ga0209350

Basic Information
Taxon OID	3300026277 Open in IMG/M
Scaffold ID	Ga0209350_1000208 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209350_1000208 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38406
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (67.74%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

38406

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (67.74%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004601	Metagenome / Metatranscriptome	431	Y
F046289	Metagenome / Metatranscriptome	151	Y
F063506	Metagenome / Metatranscriptome	129	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100020821	F004601	GAG	MLVGLSVQLRPVAGETVAVRATVPVNPLTGATVIVEAAVPPTNVLAVVGLALTEKSVTV
Ga0209350_100020823	F046289	N/A	MLAVLLVHDRAEVWLAPSTMLFGVRVQVRPAGDTEEVRPTVPVNPLTGATVMVEVAAMPTLTLAVVGLALTEKSVTMNVTVAV
Ga0209350_100020824	F004601	GAGG	MLAGVRVHVRPAGDTEEVNATVPVNPLTGATVIVEVAAVPAVVVTEVGLAVTVKSVTM
Ga0209350_100020825	F004601	N/A	VQVKPAGATELVSATVPVNPFTGATVMVDVPAMLTLVVILTGDAVTVKSVTV
Ga0209350_100020826	F004601	AGAAG	MLLGVRVQVKPAGDMELASATVPVNPLTGATVIVDAAAVPTVVVTAVGLAATVKSWTAKVTVAV
Ga0209350_100020830	F004601	AGAAG	MLVGVRVQVSPAGDTEDVRATVPVNPCTGATVMVEAPAALASAVTLVGLAVTVKSLTVTVTVAE
Ga0209350_100020831	F046289	N/A	VLVQDRVEPWLAPRTILVGARVHVNPAGLTLDVSATVPVNPFTGATVMVEVAAVPALTATVVGLAVTEKSVTV
Ga0209350_100020835	F046289	AGG	VLLVHDNAEVWLAPRTMLAGVRVQVRPAGETEEVRATVPVKPFTGATVIVEVAATPTLTLAVVGLAVTVKSCTVKVTVAV
Ga0209350_100020837	F046289	N/A	VAVVEEHDKLEVWLAPRTMLAGVRVHVRPAGATEEVRATVPVNPLTGATVIVEVAAVPAVVVTDVGLAVTLKSTIL
Ga0209350_100020838	F004601	N/A	VQVNPVAGDTEEVRATVPVNPWSGATVIVEVPAVPALAVTLVGEAVTEKSLMVTVTVAV
Ga0209350_100020839	F046289	AGG	VEVWDAPRTMLAGVRVQVSPAGETDDVRATVPVKPFTGATVMVEVAATPAFAAAVVGLAVTVKSVTV
Ga0209350_100020846	F046289	GAG	VEVWEAPRTILVGDRVHVKPAGETALVSATVPVNPLTGATVIAEVPAVPTVVVTEVGLAATVKSFTVTVTVAL
Ga0209350_100020856	F063506	GAGG	VHDRVDVPDPPAILVEDRLQDRLVELVVTARLTVPVNPLSGAIVTVEVAATPAFAVTLVGLALMVKSGALVT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209350_1000208

Overview

Ecosystem & Geography

Associated Families

Sequences