NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209350_1000341

Scaffold Ga0209350_1000341


Overview

Basic Information
Taxon OID3300026277 Open in IMG/M
Scaffold IDGa0209350_1000341 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28257
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (53.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005236Metagenome / Metatranscriptome407Y
F023303Metagenome210N
F030713Metagenome / Metatranscriptome184N
F034521Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0209350_100034119F023303N/ALSFGQKKFPLSSALLLLTALAGTLATTVVSFLLIVLGRGGPSLAAYGIGSMSLFAFLLTIQVLHGKSESKDDFVKKGAVRTAIATSFTVAYLMLLALGLDPGLGLNLNNGILANFHLVYIFTIGTYFVTASLERIVDLVKGKSSIFG
Ga0209350_100034122F030713GGCGGMPDKKRLPPWEEAKLVFKMQEETRKRKLLEDDMQRHRARMKRVGPNTSDELEENRKRLRALQERIEHEDDR
Ga0209350_100034125F005236AGCAGMGFLSIMGKLLIGLAMVTLPVAVSLILVFSETLTTIGVASSLGASIFVFFCGIYAGFLGIKYERLQQKFESFINPLRIRTNSVNLIKAICPIDYKQVVFVHVSPHRDDARPDGLDIFLGSCVVKLR
Ga0209350_100034127F034521N/AMELRILESIESEGSIRTDQLRKRLKLEAKENNSKFHRSLNNLESYALIIGVEDPRPEKHLHANIWQTWDTRTREAKSHASLPYGEALSKLLVKTIDACLLAREDQISAWFEWSYEMQAAKEQSLLDGAILRSGHYLVSSSVRDIRKRLGPARRL
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