NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209350_1000379

Scaffold Ga0209350_1000379


Overview

Basic Information
Taxon OID3300026277 Open in IMG/M
Scaffold IDGa0209350_1000379 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26812
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005205Metagenome / Metatranscriptome408N
F008075Metagenome / Metatranscriptome339N
F009595Metagenome315Y
F013400Metagenome / Metatranscriptome271N
F027474Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0209350_100037914F009595GAGMLVQCFSQTIENLFGRPVKEQLIRILAEHKIPKSEIGARFDDVARVLTDVFGSSSRLLIFKTVVELYEEYSVRATFGFYDSLKDQILYLRERVLADIIKPRHSPTIDDSIYVTGPRRIG
Ga0209350_100037915F008075AGGAMRESREFANTFQLSVAEGLADTLGSIVMQTLKTLLTYSLETYAEKPSELHRELSKVFGSGATTLERMITKELFQRLSLRYSNELDFEASVNLARRDMILSERGNN
Ga0209350_100037918F013400AGGAGMVDATLLTGMWIVAVLQLGLEAGIVLYAYRLTRLTGSFRAWTMIILAFVLTTASSVFGIFLLLINPELIVGLIQSISLSTLIVSYAVSIATSLLFFFGVFDLVRRFKLAAKKPPSASAST
Ga0209350_10003794F005205N/AMSTVKIQGALQTQKHVRALLSGGLGVFSSLLAIGWALWAYNLPSAVNVTSLQSQNLMLAQLVLAFIMLLGSGLMLARFTLPGGVINILGALTTFLIGVYFSSGIADAARSKDLTALPLRFSGVYSGTVSLATDRIVSTFLIVPVFPIATLLLISGLGALVTYRSGRRAGVHG
Ga0209350_10003798F027474GGAMTDQASNWKIHVKKGSYEVQVEGPNPERVEKMFDELVKKYMKKIASP
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