Scaffold Ga0209350

Basic Information
Taxon OID	3300026277 Open in IMG/M
Scaffold ID	Ga0209350_1000398 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209350_1000398 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25609
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25609

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004426	Metagenome	438	N
F013876	Metagenome	267	Y
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100039810	F025249	GAG	MGGLDSRFSDSAEGRDSTGSDRRTPPPSVFGIIVVGLLAGLIVGLLAGPSFTLQGFSLGFAGGALITAGLYFYTAERSRPAK
Ga0209350_100039816	F004426	N/A	VDDELRVTTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRIPESGSAIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHRGRFDRTITLTENLIDKHWDAVDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGEQVKPEELRGSTLLPVSIATEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFERDSSQWRIFEKAMRGFVKKRVYKSLRQSASRRELRSIQYLNREIAERLRRSLRRNVQILSKAMLNPRMTPKINMVPGKTRKEIVLGERKHRRGKKHSREATRSVIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVYVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA
Ga0209350_100039820	F013876	AGGAGG	MAADLLSIITTNALIAVFALFLAVASLVRIILFEQRPFGGGGVGPVPGLFETALTFVLFALSIVSIYNLLRLRERYARLQALAEKLGR
Ga0209350_10003988	F014601	AGGAG	MTGSKRDNRRSSLIPRAVLAGLVAGIAAGVVSFYIVGLVGLIIGFIAGAIVGSRTVLLMHKAREQSQ
Ga0209350_10003989	F028763	AGGAG	MSEPARPRRRIALGIFAVIMGCVSLIGLSSTSYYFGLGIFGGAYGAVMIALGVALIAKKETVTG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209350_1000398

Overview

Ecosystem & Geography

Associated Families

Sequences